Healthy Oat Flour Pumpkin Muffins with Chocolate Chips
These delicious and healthy pumpkin oatmeal muffins are made with oat flour, canned pumpkin puree, creamy natural peanut butter for a protein boost (while also keeping them soft and fluffy), and chocolate chips of course! Naturally sweetened with maple syrup, this easy gluten-free muffin recipe is the perfect nourishing fall snack or breakfast accompaniment! Recipe makes 12 and freezes well, perfect for meal prep!

With just 10 minutes of prep time, these fluffy pumpkin chocolate chip muffins are irresistible! Seriously: the proof is in the pictures. Haha. I instantly regretted my decision to try to snap these photos while my toddler was running around, BUT when he couldn’t keep his hands off these, I had full confidence that you’d love them too!
(we also made a batch of my super quick pumpkin pie chia pudding with the leftover pumpkin puree, and I cannot wait to have these on hand all week for quick protein packed snacks I crave!)
So what makes these babies healthy? My dietitian philosophy is all about addition not restriction. We’re not interested in cutting things out here, I wanna talk what can we add to make things more nourishing, yes, but also taste friggin’ delicious! I love that the fiber-boost form the oat flour, and extra protein from the eggs and peanut butter make them more filling, but these are also just the right amount of sweet form the maple syrup, and of course, melty chocolate chips. They truly hit all the marks!

Plus, everything can be mixed into one bowl (no need to separate wet and dry ingredients) for minimal mess and clean up! With a cook time of max 20 minutes, before you know it, you’ve got a delicious and filling cozy fall snack ready to go!
Let’s make these muffins together, shall we?
- Mix all your wet ingredients together
- Add your dry ingredients to the same bowl
- Stir until just combined. Don’t overmix!
- Scoop into muffin tins and add more chocolate chips if you want (I mean, you know we’re adding them)
- Bake away!
- Now look at those gorgeous little things!

I can’t wait for you to try this recipe! If you do, let me know what you think in the comments below! And don’t forget to tag me on social media @lindsaypleskot with #makefoodfeelgood. It makes me so happy to see these recipes come to life in your kitchen!

The Feel-Good Meal Plan My Bestselling Cookbook is Now Available!
A fresh take on meal prep with over 100 nourishing recipes to feed your family with ease.
Nourishing Oat Flour Pumpkin Muffins
- Prep Time: 10 Minutes
- Cook Time: 18-20 Minutes
- Total Time: 30
- Yield: 12 Muffins 1x
- Category: Baking
- Method: Baked
- Cuisine: North American
- Diet: Vegetarian
Description
These wholesome pumpkin muffins are made with oat flour (making them gluten-free), canned pumpkin purée and creamy natural peanut butter for a protein boost while keeping them soft and fluffy! Naturally sweetened with maple syrup, they are the perfect pick me up with (health) benefits!
Ingredients
- 1 cup pumpkin purée
- ⅓ cup milk or milk alternative of choice
- 2 large eggs
- ⅓ cup natural peanut butter
- ⅓ cup maple syrup
- 2 tsp vanilla
- 1 ½ cups oat flour
- 1 ½ teaspoons pumpkin pie spice
- 2 tsp baking powder
- ¼ tsp salt
- ¼ cup mini chocolate chips
Instructions
- Preheat oven to 350F. Line a muffin tray with silicone or parchment paper liners and set aside.
- Combine all wet ingredients (pumpkin purée, milk, eggs, peanut butter, maple syrup, vanilla) in a medium sized bowl. Whisk until well combined.
- Add remaining ingredients and stir with a fork to incorporate all of the dry ingredients. Don’t overmix!
- Divide the mixture between the muffin tins, topping with more chocolate chips and a few oat flakes for decor if desired. Bake for 18-20 minutes. Muffins are done when a cake tester or toothpick, inserted into the middle of the muffin, comes out clean.
- Allow muffins to cool and enjoy immediately (or see storage directions below)!
Notes
To Store on Counter Top: Store in airtight container for 2-5 days.
To Store in Fridge: Store in airtight container for up to a week.
To Store in Freezer: Store in airtight container for up to 3 months.
Other Optional Add-Ins: Pumpkin seeds, walnuts, cranberries or raisins.
BESTSELLING The Feel-Good Meal Plan Cookbook
Thank you for this recipe—super moist and so easy! The whole family loved these! Using regular sized dark chocolate chips worked well flavor-wise, and although the fam probably wouldn’t enjoy it as much as I would, adding cranberries and/or some nuts/seeds would be fantastic! Definitely going to have to make more and put some extras in the freezer to have on hand for some tasty (and healthy!) treats.
I’m so happy the whole fam is enjoying these MaryAnn! I love the idea of adding cranberries, nuts/seeds! That does sound fantastic! I’ve been keeping a batch in the freezer and let me tell you it is very nice to be able to pull these out and have an instant snack! Enjoy!
I made these and they are such an easy recipe !!! Made it all more easier to get everything together and create. I love the pumpkin and even more so loved the oat. Plus no added sugar makes them “healthy” 😉
The reason I only gave this a three star is a felt there could be more spice and more of a kick to them. If I have a bite of them without a chocolate chip, something feels missing.
Though saying that, I will make them again and maybe add something a little more to them!!
Great recipe!
I am so glad you found this recipe so easy Annie! I love the idea of adding cranberries, nuts/seeds! And yes, and easy fix to add more spice in there to your liking!
LOVE. Have made these 3 times now and they disappear instantly. They come together so quickly too, great recipe! Thank you!!
Ah this makes me SO happy Amanda!! At least they appear as quick as they disappear! haha thanks for sharing! Have a great day!
These were delicious!! Do you think they would be equally good with almond butter instead of peanut butter?
Hi Nicole! I am so happy to hear you loved these! And YES! I totally think almond butter would be delish in these! If you need a nut free option pumpkin seed butter should work too 🙂 Enjoy!
These muffins are a perfect healthy treat for fall !! a Quick easy snack for kids lunch too ! These are a must try !!
Hi Suzanne! Yay to the school lunch win! So happy you and the fam are enjoying these. Thanks for sharing your feedback!
Delicious, quick to put together, and perfect for fall! Also excited to make something for my sister who is lactose and gluten free that is delicious and a normal texture!
So happy you are enjoying them Samantha! And yay to being versatile for your sis too! Great feedback to hear re: the texture too. Enjoy the fall baking!
I am not a baker by any stretch but I really enjoyed making these! Super straightforward and they came out perfect. They taste healthy and not cakey like so many muffins out there. Threw one on my kids plate at breakfast to be the wild mum giving him chocolate at 7am. He approved them which is pretty unique these days, so will be making them in big batches for us both to enjoy.
Thanks Lindsay!
Yay! I Love everything about this! Mom win, baking win, love it! So happy they are being enjoyed all around Anna! Thanks for sharing your feedback! xo
Would love to use more of your recipes, but it requires that I see the nutrition info before I begin. (Protein content specifically) can you start including this?
Hi Taylor! So happy to hear you’re interested in the recipes. Unfortunately nutrition info is something we don’t include as it can be triggering for some. But I know there are different online platforms like My Fitness Pal where you can enter recipes and get the nutrition info calculated for you! I hope something like that works for you so you are able to use the recipes! Thanks for understanding!
My favourite muffin recipe. I used dark chocolate chips and doubled to 1/2 cup, because chocolate. But, otherwise left as is and absolutely love them, as does my 2 year old daughter.
Ah this made my day Caitlin! And good call on doubling the chocolate 😉 So glad your daughter is loving them too! Thanks for sharing!
This recipe met my main criteria for anything I make, -1) easy, with ingredients I have on hand, and 2) delicious. I didn’t know oat flour was so easy to make. I will definitely use it for other recipes as well. The pumpkin pie spice adds some nice flavor. The pumpkin makes the muffins nice and moist and I always love using maple syrup in baking, rather than sugar. The addition of peanut butter was unexpected but I loved it. Thanks again Lindsay, for another great recipe!
I’m so glad these were a hit for you Kelly and that you enjoted all the flavors (including the surprise PB! haha). Thanks for sharing your review! Enjoy! xo